Dr. McManus completed his postdoctoral training as a Cancer Research Institute fellow at the intersection of RNA-based technologies and its applications to human disease. In the laboratory of Nobel Laureate Phillip A. Sharp in the Center for Cancer Research at the MIT, he studied the role of RNA-interference pathways in mammals, developing tools to probe gene regulation. Since 2004 he has been a principle investigator at UCSF, overseeing a very productive and interactive lab at UCSF, studying the basic biological processes relating to gene regulation and cell biology, using cultured cells and the mouse as a model. In 2010 Dr. McManus was awarded tenure in the Department of Microbiology and Immunology, and thereafter bestowed a Vincent and Stella Coates Endowed Chair for research excellence. He founded the W.M. Keck Center for Noncoding RNAs and a heavily used ViraCore at UCSF. At UCSF he has been granted a number of noteworthy research awards for excellence in technologies and collaboration: the Sandler Integrative Science Award, the New Technologies Award, the PBBR Science Award, Breakthrough Technologies Award, and the WM Keck Award. He was recently awarded a Transformative Award from the NIH Directors Office for his pioneering research on the reconstruction of ancestral cells by enzymatic recording. Indeed his work has a strong technology component, having developed cutting-edge research tools and large-scale resources that relate to small RNAs (microRNA, RNAi, and CRISPR) for the interrogation of gene function and their potential use in the intervention of human disease. His lab has built many mouse and human genome-scale lentiviral libraries, mouse and human genome shRNA and Cas9 libraries, pioneered novel high-throughput cell-based screening technologies, and is highly collaborative. He maintains a very diverse program, with students and postdocs and research technicians working in a variety of research areas.

recent publications

Gerhard DS, Clemons PA, Shamji AF, Hon C, Wagner BK, Schreiber SL, et al. Transforming Big Data into cancer-relevant insight: An initial, multi-tier approach to assess reproducibility and relevance..; 2016. (Mol Cancer Res).
Khan IS, Park CY, Mavropoulos A, Shariat N, Pollack JL, Barczak AJ, et al. Identification of MiR-205 As a MicroRNA That Is Highly Expressed in Medullary Thymic Epithelial Cells.. Vol 10.; 2015. (PLoS ONE; vol 10; no 8).
Boettcher M, McManus MT. Choosing the Right Tool for the Job: RNAi, TALEN, or CRISPR.. Vol 58.; 2015. (Mol Cell; vol 58; no 4).
Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, et al. Integrative analysis of 111 reference human epigenomes.. Vol 518.; 2015. (Nature; vol 518; no 7539).
Gascard P, Bilenky M, Sigaroudinia M, Zhao J, Li L, Carles A, et al. Epigenetic and transcriptional determinants of the human breast.. Vol 6.; 2015. (Nat Commun; vol 6).
Patton JG, Franklin JL, Weaver AM, Vickers K, Zhang B, Coffey RJ, et al. Biogenesis, delivery, and function of extracellular RNA.. Vol 4.; 2015. (J Extracell Vesicles; vol 4).
Zhao W, Pollack JL, Blagev DP, Zaitlen N, McManus MT, Erle DJ. Massively parallel functional annotation of 3' untranslated regions..; 2014. (Nat Biotechnol).
Hangauer MJ, Carpenter S, McManus MT. Discovering the complexity of the metazoan transcriptome.. Vol 15.; 2014. (Genome Biol; vol 15; no 4).